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Biology · Introductory biology · Concept

Designing a controlled experiment

An experiment tests a hypothesis by changing one factor and measuring the effect. The independent variable is the factor the experimenter changes; the dependent variable is what is measured; controlled variables are held the same so they cannot explain the result. A control group, treated the same except for the independent variable, gives the baseline. Random assignment and replication guard against confounders and chance, so a difference between groups can be credited to the treatment.

Hypothesis and prediction

A hypothesis is a testable explanation; a prediction states what you should observe if it is right. The hypothesis that light intensity limits photosynthesis predicts that pondweed in brighter light gives off oxygen bubbles faster.

Variables

Every experiment names its variables before it begins.

The variables in a light and photosynthesis experiment
VariableMeaningIn this experiment
IndependentThe factor changed on purposeLight intensity
DependentThe outcome measuredOxygen bubbles per minute
ControlledFactors held the same in every groupTemperature, CO₂, species and plant size

Controls

A negative control shows what happens without the treatment, such as pondweed kept in the dark; a positive control shows the method can detect an effect when one should occur. Without a control there is nothing to compare the treatment with.

Replication and random assignment

One plant per group cannot separate the treatment’s effect from one plant’s quirks. Use several independent experimental units, called biological replicates, in each group, and assign them to groups at random so that differences you did not measure spread evenly between the groups. Measuring the same plant three times is a technical replicate: it shows how precise the measurement is, not how much plants vary.

A controlled design for the fertilizer test
PartPlan
QuestionDoes fertilizer make bean seedlings grow taller?
Independent variableFertilizer: water only or fertilizer
Dependent variablePlant height after three weeks (cm)
Controlled variablesBean variety, light, water, soil and pot
Groups10 water only (control), 10 fertilizer
Confounder addressedBench position: assigned at random

Correlation is not causation

In an observational study the researcher only records what happens. A confounder, a factor that affects both variables, can link them without one causing the other. Only an experiment with random assignment supports a claim that one causes the other; Statistics can then test whether a difference between groups is larger than chance.

Common mistakes

  • Changing two factors at once, such as light and temperature: the result cannot be credited to either.
  • Describing the control group as having no variables: it is the group without the treatment, treated the same in every other way.
  • Counting repeated measurements of one subject as replicates: they show measurement error, not variation between subjects.
  • Concluding cause from a correlation in observational data: a confounder may explain both variables.

Key terms

Hypothesis
A testable explanation for an observation. It leads to predictions that an experiment can support or contradict; support makes it more credible but never proves it for good.
Independent variable
The factor an experimenter changes on purpose to test its effect. In a test of light on photosynthesis, light intensity is the independent variable.
Dependent variable
The outcome measured to see whether it depends on the independent variable, such as the rate of oxygen release in a test of light on photosynthesis.
Controlled variable
A factor kept the same in every group so that it cannot explain a difference between them, such as temperature and species in a test of light on photosynthesis.
Experimental control
A group or condition used for comparison. A negative control should show no effect; a positive control should show a known effect, proving the method works.
Experimental unit
The thing a treatment is applied to independently, such as one plant or one dish. Measuring the same unit twice does not make two units.
Biological replicate
An independent biological sample, such as a separate plant or mouse, that captures the natural variation between individuals.
Technical replicate
A repeated measurement of the same sample. It shows measurement error, not variation between individuals, so it does not add to the sample size.
Random assignment
Using chance to decide which units get which treatment, so other differences spread evenly across the groups. Random sampling, choosing who is studied, is a different step.
Confounder
A variable linked to both the treatment and the outcome, which could explain a difference instead of the treatment.
Observational study
A study that records what happens without assigning treatments. It can show an association, but not on its own that one thing causes another.
Causal claim
A claim that changing one thing changes another. A controlled, randomized experiment can support it; a correlation alone cannot.

Work through an example

A student tests whether a fertilizer makes bean plants grow taller. She gives fertilizer to one plant on a sunny windowsill and none to one plant in a shaded corner. After three weeks the fertilized plant is 4 cm taller. Name the independent and dependent variables, find two flaws, and redesign the experiment.

Fix a flawed experiment →
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After reading

Study it, then try it

Practice the key terms as flashcards, then open the example in its tool, change a value and keep a useful result on your board.

Study the 12 key terms Plan it in the Experiment planner Open worked example on a board Experimental design in Biology Reference

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